*----------------------------------------------------------------------*
*     Burkhard Rost		Aug,        1998      version 0.1      *
*     LION			http://www.columbia.edu/~rost/         *
*     D-69012 Heidelberg	rost@columbia.edu	               *
*----------------------------------------------------------------------*
*                                                                      *
* ------------------------------                                       *
* TOC of this file                                                     *
* ------------------------------                                       *
*                                                                      *
* - This directory contains                                            *
* - DO to test installation                                            *
* - How to produce the results                                         *
*                                                                      *
* ------------------------------                                       *
* This directory contains:                                             *
* ------------------------------                                       *
*                                                                      *
*     examples for PROF in/out                                         *
*   - INPUT to PROF:                                                   *
*     *.hssp, *.saf, *.msf, *.dssp, *.gcg, *.fastamul, paho_chick      *
*   - OUTPUT from PROF:                                                *
*     *.prof*, *.rdb*                                                  *
*                                                                      *
* ------------------------------                                       *
* DO to test installation:                                             *
* ------------------------------                                       *
*                                                                      *

PROMPT> mkdir test
PROMPT> cd test
PROMPT> prof/scr/test-install.pl do 

*                                                                      *
*                This will run PROF on all files in prof/exa.          *
*                Differences between the expected and your results     *
*                   will be written into a file                        *
*                   TEST-PROF-INSTALLATION.out                         *
*                                                                      *
* ------------------------------                                       *
* How to produce the results:                                          *
* ------------------------------                                       *
*                                                                      *
* note: $PROF is the directory where you installed PROF                *
*                                                                      *
PROMPT> $PROF/prof $PROF/exa/1ppt.hssp   fileRdb=1ppt.rdbProfSec sec ascii
PROMPT> $PROF/prof $PROF/exa/1ppt.hssp   fileRdb=1ppt.rdbProfAcc acc ascii
PROMPT> $PROF/prof $PROF/exa/1ppt.hssp   fileRdb=1ppt.rdbProfBoth both ascii
PROMPT> $PROF/prof $PROF/exa/1ppt.hssp   fileRdb=1ppt.rdbProf ascii

PROMPT> $PROF/prof $PROF/exa/1prc.hssp_L fileRdb=1prcL.rdbProfSec sec ascii
PROMPT> $PROF/prof $PROF/exa/1prc.hssp_L fileRdb=1prcL.rdbProfAcc acc ascii
PROMPT> $PROF/prof $PROF/exa/1prc.hssp_L fileRdb=1prcL.rdbProfHtm htm ascii
PROMPT> $PROF/prof $PROF/exa/1prc.hssp_L fileRdb=1prcL.rdbProf ascii html

PROMPT> $PROF/prof $PROF/exa/1shg.hssp   fileRdb=1shg.rdbProf both saf  fileAli=1shg.profSaf dssp fileDssp=1shg.profDssp ascii
PROMPT> $PROF/prof $PROF/exa/1shg.hssp   fileRdb=1shg.rdbProfFilter both filter optFilter=red=70 msf fileAli=1shg.profFilterMsf ascii


PROMPT> $PROF/prof $PROF/exa/256b.dssp      fileRdb=256b.rdbProfSec sec ascii
PROMPT> $PROF/prof $PROF/exa/2ppt.fastamul  fileRdb=2ppt.rdbProfSec sec ascii
PROMPT> $PROF/prof $PROF/exa/8rnt.msf       fileRdb=8rnt.rdbProfSec sec ascii
PROMPT> $PROF/prof $PROF/exa/9rnt.saf       fileRdb=9rnt.rdbProfSec sec ascii
PROMPT> $PROF/prof $PROF/exa/paho_chick     fileRdb=paho.rdbProfSec sec ascii
*                                                                      *
*----------------------------------------------------------------------*


