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# Institute for Biomedical Research, Steve Rozen, and Helen Skaletsky
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VALGRIND_FLAG = 

test: makeexes testtm testdpal testcore
	-echo 'TESTING ALL:'

testcore:
	-echo 'Testing primer3_core $(VALGRIND_FLAG)'; perl p3test.pl $(VALGRIND_FLAG)

testdpal:
	-echo 'Testing alignment calcs'; perl dpal_test.pl $(VALGRIND_FLAG); 

testtm:
	-echo 'Testing Tm calcs'; perl oligotm_test.pl $(VALGRIND_FLAG);

makeexes:
	cd ../src; make

clean:
	-rm -rf primer_list_tmp/*
	-rm -rf primer1_list_tmp/*
	-rm -f primer_global_err/*.tmp primer_global_err/*.tmp2 primer_global_err/*.bak
	-rm -f *.tmp *.bak *~
	-rm -f hyb_probe_only.for hyb_probe_only.int 
	-rm -f right_only.for right_only.rev left_only.for
	-rm -f pcr_primers_and_io.int pcr_primers_and_io.rev pcr_primers_and_io.for
	-rm -f pcr_primers.rev pcr_primers.for
	-rm -f oligotm.*.valg  # valgrind output from oligotm_test.pl --valgrind
	-rm -f ntdpal.*.valg   # valgrind output from dpal_test.pl --valgrind
	-rm -f *.vg */*.vg     # valgrind output from p3test{,z}.pl --valgrind
