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                                  ---  PhyML 20110915  ---                                             
                            http://www.atgc-montpellier.fr/phyml                                          
                         Copyright CNRS - Universite Montpellier II                                 
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. Sequence filename: 			nucleic
. Data set: 				#1
. Tree topology search : 		NNIs
. Initial tree: 			BioNJ
. Model of nucleotides substitution: 	HKY85
. Number of taxa: 			54
. Log-likelihood: 			-5948.38536
. Unconstrained likelihood: 		-4289.64123
. Parsimony: 				848
. Tree size: 				1.06224
. Transition/transversion ratio: 	3.862
. Nucleotides frequencies:
  - f(A)= 0.25229
  - f(C)= 0.21152
  - f(G)= 0.30687
  - f(T)= 0.22932

. Run ID:				none
. Random seed:				1316042764
. Subtree patterns aliasing:		no
. Version:				20110915
. Time used:				0h0m23s (23 seconds)

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 Suggested citations:
 S. Guindon, JF. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, O. Gascuel
 "New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0."
 Systematic Biology. 2010. 59(3):307-321.

 S. Guindon & O. Gascuel
 "A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
 Systematic Biology. 2003. 52(5):696-704.
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